WebJul 31, 2024 · Then you could try to only annotate the sequences where MMseqs2 does not find any good hits with HHblits. ... As each single threaded search for alignments has to access all the database. I think what happens is that hhblits loads the database slowly into RAM from disk if the query needs it. So to speed this up first option is to make a RAM ... WebFeb 10, 2024 · Find and fix vulnerabilities Codespaces. Instant dev environments Copilot. Write better code with AI Code review. Manage code changes Issues. Plan and track work Discussions ... Could not find HHBlits database #48 opened Jul 27, 2024 by karlaarz. 1. Errors encountered when trying to run multimer mode ...
OpenStructure hhblits - Search related sequences in …
WebJul 27, 2024 · Could not find HHBlits database #48. Open karlaarz opened this issue Jul 27, 2024 · 1 comment Open Could not find HHBlits database #48. karlaarz opened this issue Jul 27, 2024 · 1 comment Comments. Copy link karlaarz commented Jul 27, 2024. Hi! WebScripts to generate the pdb70 database for hh-suite on the basis of pdb's mmcif format - GitHub - soedinglab/hhdatabase_cif70: Scripts to generate the pdb70 database for hh-suite on the basis of pdb's mmcif format ... Could not load tags. Nothing to show {{ refName }} default. View all tags. ... pdb70_hhblits_merge.sh . pdb70_hhblits_split.sh ... ferragamo fiamma shoes
HH-suite - Wikipedia
WebJul 19, 2024 · Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. WebNov 26, 2024 · regards I have installed version 3.0 of hh-suite installed on an ubuntu server 16.04. I downloaded the uniclust30_2024_08 database, however when I run hhblits, I get the following error: Executed command: hhblits -i file.fasta -o output ... WebDESCRIPTION ¶. HHblits 3.3.0: HMM-HMM-based lightning-fast iterative sequence search HHblits is a sensitive, general-purpose, iterative sequence search tool that represents both query and database sequences by HMMs. You can search HHblits databases starting with a single query sequence, a multiple sequence alignment (MSA), or an HMM. delivery and collection of children